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claude-botandClaude Opus 5 63f25c1511 fix(ceph): stop mon compacting on every paxos trim (240 GB/day of writes)
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The three Ceph monitors were writing 240 GB/day between them for a ~106 MB
database. That was ~62% of all OS-disk writes on the nodes and roughly a
quarter of everything the cluster writes -- more than every client workload
combined.

Measured 2026-08-19:

  paxos transactions      ~99,000/day  (1.15/s, sampled over 60 s)
  paxos logical data       811 MB/day  (21.9 GB over 27 d mon uptime)
  ACTUAL mon disk writes    80 GB/day  per mon, 240 GB/day for three
                                       (cgroup io.stat: 2.15 TB / 27 d)
  => ~98x write amplification

Cause: mon_compact_on_trim, upstream default true, "compact a certain prefix
(including paxos) when we trim its old states". With paxos_trim_min at 250 and
~99k transactions/day, that is hundreds of forced range compactions per day,
each rewriting the store.

The churn driving it is not cluster activity. 99% of paxos versions are cluster
log and mgr stats -- logm 6.7M, mgrstat 4.4M, against osdmap's 9.6k. Every Rook
operator poll (mgr stat / versions / status / report / osd dump; 23 audit
entries per minute per mon) becomes a cluster-log entry, hence a paxos
transaction, replicated to all three mons. Reducing that polling is the
complementary fix and is tracked separately; this change removes the
amplification regardless of the rate.

This does NOT disable compaction. RocksDB's own levelled compaction still runs
and still reclaims trimmed keys; what stops is the extra forced compact_range
on every trim. Two backstops if that assumption is wrong:

  - mon_data_size_warn (15 GB default) raises HEALTH_WARN, which CephHealthWarn
    in monitoring-rules already alerts on.
  - mon_compact_on_start is set to true here (upstream default false), so every
    mon restart -- upgrade, node reboot, reschedule -- does a full compaction.
    Cheap on a ~106 MB store.

Baseline for verification, mon.a cgroup io.stat at 2026-08-19T12:56:29Z:
wbytes=2154257645056, wios=22509683, uptime since 2026-07-23T13:20:44Z.

Note on methodology: cAdvisor's container_fs_writes_bytes_total roughly
double-counts here -- it reported 425 GB/day for OSDs where nvme0n1 shows 212,
and 155 GB/day for mons where cgroup io.stat shows 80. It was used only to rank
writers; every figure above comes from cgroup io.stat or kernel diskstats, which
reconcile with each other and with the drives' SMART counters.

Refs #434

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-19 14:56:47 +02:00
k.renner 3be75f535e Merge pull request 'fix(ceph): replicapool and cephfs data to size 2, min_size 1' (#519) from fix-ceph-replica-size-2 into master
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Reviewed-on: k.renner/homelab#519
2026-08-19 12:40:01 +00:00
@@ -45,6 +45,49 @@ spec:
# would be circular, and Rook only applies mon.volumeClaimTemplate to
# newly created mons, never migrating existing ones.
mon_data_avail_warn: "20"
# Stop compacting the whole RocksDB prefix on every paxos trim.
#
# Upstream default is true — "Compact a certain prefix (including paxos)
# when we trim its old states" — which is fine at low paxos rates and
# pathological here. Measured 2026-08-19:
#
# paxos transactions ~99,000/day (1.15/s, sampled over 60 s)
# paxos logical data 811 MB/day (21.9 GB over 27 d uptime)
# ACTUAL mon disk writes 80 GB/day per mon, 240 GB/day for three
# (cgroup io.stat: 2.15 TB/27 d)
# => ~98x write amplification, for a ~106 MB database
#
# That was ~62% of all OS-disk writes on these nodes and roughly a
# quarter of everything the cluster writes — more than every client
# workload combined. With paxos_trim_min at 250, ~99k transactions/day
# means hundreds of forced range compactions per day, each rewriting the
# store.
#
# The churn itself is 99% cluster log and mgr stats, not real cluster
# activity: logm holds 6.7M paxos versions and mgrstat 4.4M, against
# osdmap's 9.6k. Every Rook-operator poll (mgr stat / versions / status /
# report / osd dump — 23 audit entries per minute per mon) becomes a
# cluster-log entry, hence a paxos transaction, replicated to all three
# mons. Reducing that polling is the complementary fix and is tracked
# separately; this setting removes the amplification regardless of rate.
#
# This does NOT disable compaction. RocksDB's own levelled compaction
# still runs and still reclaims trimmed keys; what stops is the extra
# forced compact_range on every trim. Store growth is therefore bounded
# by normal compaction, and there are two backstops if that assumption is
# wrong: mon_data_size_warn (15 GB default) raises HEALTH_WARN, which
# CephHealthWarn in monitoring-rules already alerts on, and
# mon_compact_on_start below compacts fully on every mon restart.
#
# Watch after applying: `du -sh /var/lib/rook/mon-*/store.db` on a node,
# or the mon store size in `ceph status`. If it grows past ~1 GB and does
# not come back down, revisit rather than leaving it.
mon_compact_on_trim: "false"
# Compensating control for the above: a full compaction on mon start.
# Upstream default is false. Mons restart on upgrades, node reboots and
# reschedules, so this gives a periodic full reclaim without paying for
# one on every trim. Cheap here — the store is ~106 MB.
mon_compact_on_start: "true"
mgr:
mgr/volumes/max_concurrent_clones: "16"
# Discard/TRIM for the QLC NVMe per host (CT1000P3PSSD8, Crucial P3 Plus —